PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006457.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 250aa    MW: 26353 Da    PI: 7.3956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006457.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002798120123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C ++F ++  L  H++ H
  Aco006457.1  98 FACNYCRRRFYSSQALGGHQNAH 120
                  78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-695126No hitNo description
PROSITE profilePS5015711.36598125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDTTTLSESS SLSLSQYSPH HNHNKAHPST TMTHTREEQE MSKEEKEPRD DHDQPNTNNN  60
NNSEENNRSE ASAALPAVEL DLLGVLAAPP PPAEPRVFAC NYCRRRFYSS QALGGHQNAH  120
KRERTLAKRC AAPLNGGSSR PLGIRAHAVI HKPCLGATSS AAAVGGGWVF GNHAESRLAG  180
IGRLYAQDYV FSAAARAHAA RFEGAEAIGY KWMGGGGGGG GGGGGGGGDS SVKVKEEKEL  240
TDVDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102458.10.0zinc finger protein AZF1-like
TrEMBLA0A199VW871e-119A0A199VW87_ANACO; Zinc finger protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-19zinc-finger protein 1