PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 296aa    MW: 33688.1 Da    PI: 6.8109
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006046.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.9e-34181102103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ li+w  ++nsf+vl++ ef++ +Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll  i 
   Aco006046.1  18 FVVKTYQMVNDPRTDVLIRWGMRNNSFLVLNPAEFSQFLLPCYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQTHLLPLIL 105
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Aco006046.1 106 RRKKK 110
                   99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3612101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5214107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3316107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2818107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEEKPVAYDG HEGHAAPFVV KTYQMVNDPR TDVLIRWGMR NNSFLVLNPA EFSQFLLPCY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAH ESFLRGQTHL LPLILRRKKK KSLSNEQSSS  120
NSRAKDSVVD EDEDEDVLVK EVTRLRQEQR LLEEELQGMN KRIQATERRP QQMMLFLAKA  180
ADEPESLSRL ILSKKQQFAA EKRRRLVNSP ITSTSTTTAP LTLTGPLMEL GFNEEVITTH  240
SVDEEKKPLY TVSSSVAGIE PSGWTEFGLE PEPKSASATD SVPFPFSLLG RGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221310719129Heat shock factor protein 1
5d5v_B1e-221310719129Heat shock factor protein 1
5d5v_D1e-221310719129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110RRKKKK
2201205KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105591.10.0heat stress transcription factor C-1b-like
SwissprotQ6VBA44e-75HFC1A_ORYSJ; Heat stress transcription factor C-1a
SwissprotQ942D63e-76HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A199UDT80.0A0A199UDT8_ANACO; Heat stress transcription factor C-1b (Fragment)
STRINGXP_008810034.12e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-43heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]