PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005862.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 363aa    MW: 41473 Da    PI: 6.0416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005862.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk+++++ed++++ ++sws+  nsf+v+d++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+ll++ik
   Aco005862.1  47 FLKKTFDMVEDPRTDAVVSWSRARNSFIVWDSHEFASSILPKYFKHNNFSSFVRQLNTYGFRKVDPNR---------WEFANEGFLGGQKHLLKNIK 134
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Aco005862.1 135 RRRN 138
                   *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5743136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3343136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEMGRGEVIM VKREKEEGEE EGEGEGEGEV LRPKPMAGLG EAGPAPFLKK TFDMVEDPRT  60
DAVVSWSRAR NSFIVWDSHE FASSILPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE  120
GFLGGQKHLL KNIKRRRNAG LQPDENRLAG PCVELCHFGI KTEESQVKRD RNILMAEVMK  180
LRRQHQNAKA QLIAMEERVK STERKQQQIM AFLAGVLKNP IVAHRLLLHY KHKKQLEDVG  240
KRQRLMANMN PYSDNMKFRE EVRVKSEGES FLSLENSETS CLCSRGEQEE VITESNDYNL  300
DKISEVVWEE LLNVDLTSGS EMVHGDQVEM DLGVDDLGGK PCGWIGDAQN LVQQMDYLDS  360
KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-273713616129Heat shock factor protein 1
5d5v_B1e-273713616129Heat shock factor protein 1
5d5v_D1e-273713616129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105711.10.0heat shock factor protein HSF30-like
TrEMBLA0A199VF640.0A0A199VF64_ANACO; Heat shock factor protein HSF30
STRINGEOY299281e-112(Theobroma cacao)
STRINGXP_008775152.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-96heat shock transcription factor A2