PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 209aa    MW: 23766.5 Da    PI: 9.7853
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005745.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.5e-1989122134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  CsnC+tt TplWR+gp+g+k+LCnaCG+++rk +
  Aco005745.1  89 CSNCNTTRTPLWRSGPQGPKSLCNACGIRQRKAR 122
                  *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-1482124No hitNo description
SMARTSM004017.8E-2083135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-1687123IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.08687119IPR000679Zinc finger, GATA-type
CDDcd002023.34E-1388120No hitNo description
PROSITE patternPS00344089114IPR000679Zinc finger, GATA-type
PfamPF003203.2E-1789122IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRSSDLILRS LLPTNEYKNG CMEKSSPDRY ERKEDVHCSL EWTSLKMQWT RKMMGSDQLV  60
ERKLRRRKQD LQCQEQETKD NSNGIIRVCS NCNTTRTPLW RSGPQGPKSL CNACGIRQRK  120
ARRAMALAAA GGAVISAEKP IEMERNEDCC ILPYKKRCRI TPTAKKKVKF EDVIISLNNN  180
SAFHRVFPQD EKDAAILLMG LSCGLIQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098891.11e-154putative GATA transcription factor 22
TrEMBLA0A199VQU91e-118A0A199VQU9_ANACO; Putative GATA transcription factor 22
STRINGXP_008797761.12e-56(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-25cytokinin-responsive gata factor 1