PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005592.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 453aa    MW: 51192.9 Da    PI: 5.1674
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005592.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw  n++sfvv++++ f+k++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll++i+
   Aco005592.1  14 FLTKTYDMVDDPSTDSIVSWGLNNTSFVVWNPRGFEKDLLPKYFKHNNFSSFVRQLNTYGFHKIDPDQ---------WEFANEDFIRGQRHLLKNIH 101
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Aco005592.1 102 RRKP 105
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-359103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.6E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEGSPGSSNS PPPFLTKTYD MVDDPSTDSI VSWGLNNTSF VVWNPRGFEK DLLPKYFKHN  60
NFSSFVRQLN TYGFHKIDPD QWEFANEDFI RGQRHLLKNI HRRKPVHSHS LHNQGNGPLA  120
EPERQELEEE IEKLKHEKGL LIQELQKHTQ QQHGMDQQMQ SLEERLQVME QRQRNLMGSL  180
SQIVQTPGFL SKFVQKPDHF GKKRRLPKSN FFYEDANMEE NRIAPLQVVN KERSDVFATH  240
ALDTEPFDKM ESSLNSLEIF FRGVSQALGE EDMCYDGFVP GPPSTLVLVE MDASSGETDV  300
NMHSPPKLRS SSPCIGDIHS SPELAESTNY AESPALPLTE IHVVETHADN QSKIVEIDVN  360
SEPTVAEGDS TREKPNTAAS AVPTGVNDVF WEQFLTETPG SIDAQEVQSE RRDADEKRNG  420
GKVVGMGQNW WKKKNVDHLT EKMGHLSSSE KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24310319129Heat shock factor protein 1
5d5v_B2e-24310319129Heat shock factor protein 1
5d5v_D2e-24310319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099044.10.0heat stress transcription factor A-4b
SwissprotQ94J161e-160HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A199VNH50.0A0A199VNH5_ANACO; Heat stress transcription factor A-4b
STRINGXP_008776668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.17e-74heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]