PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005573.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 232aa    MW: 26423.3 Da    PI: 8.7492
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005573.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.22.8e-24289725103
                   SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   +nsf+v+d+ +f++ +Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll  i r+k++
   Aco005573.1  28 SNSFLVIDPASFSQLLLPCFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQTHLLPCIVRRKKT 97 
                   69****************************************999.........*********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-261394IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.5E-252688IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-222794IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-202894IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-94355IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404468IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-95668IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEEATRVPHG HSLSFAFASP SHHQAPGSNS FLVIDPASFS QLLLPCFFKH NNFSSFVRQL  60
NTYGFRKVDP DRWEFAHESF LRGQTHLLPC IVRRKKTNEI LAEVKEEEML IEEVRRLRKE  120
QKALEEELQG MNKRLQTTEN RPQQIMSFLT RVAQDPDLLS RLILSKKKQR PGSEHKKPRL  180
MVEPATTKLL EQSVGIASDA AAPAAKVQWS LEEAEEVPFP FSILGHDISK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-16259440120Heat shock factor protein 1
5hdg_A6e-16259430110Heat shock factor protein 1
5hdn_A6e-16259430110Heat shock factor protein 1
5hdn_B6e-16259430110Heat shock factor protein 1
5hdn_C6e-16259430110Heat shock factor protein 1
5hdn_D6e-16259430110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098172.11e-145heat stress transcription factor C-1b-like
RefseqXP_020098174.11e-145heat stress transcription factor C-1b-like
RefseqXP_020098175.11e-145heat stress transcription factor C-1b-like
SwissprotQ942D62e-61HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A199UDT81e-64A0A199UDT8_ANACO; Heat stress transcription factor C-1b (Fragment)
STRINGXP_008810034.11e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-55heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]