PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 186aa    MW: 20148 Da    PI: 8.6024
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005023.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.53.6e-41141211100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal........peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                  +CaaCk+lrr+Ca+dC++ap+fpae+p+kfanvhk+FGasnv+kll++         p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l
  Aco005023.1  14 PCAACKLLRRRCAQDCIFAPHFPAEEPQKFANVHKVFGASNVSKLLQSYadnglqeiPMQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQIEAL 111
                  7********************************************98765555555588889************************************ PP

       DUF260  91 kaelallkee 100
                  +a+lal+++e
  Aco005023.1 112 QAQLALAQAE 121
                  ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.74613122IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-4114119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MREVGGRKAG AASPCAACKL LRRRCAQDCI FAPHFPAEEP QKFANVHKVF GASNVSKLLQ  60
SYADNGLQEI PMQHRGDAVS SLVYEANARV RDPIYGCVGA ISSLQQQIEA LQAQLALAQA  120
EMVHLRMRQS AYLAHHLRRP ATANIGSRST TTGSSSSLSS PKPFFTLEGM AVDQTELDYP  180
PMWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-46101237112LOB family transfactor Ramosa2.1
5ly0_B5e-46101237112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1391744e-35AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence.
GenBankAP0149594e-35AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-35CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093150.11e-107LOB domain-containing protein 4
SwissprotQ9SHE95e-60LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A199VVM71e-106A0A199VVM7_ANACO; LOB domain-containing protein 4
STRINGXP_008787332.12e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-53LOB domain-containing protein 4