PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004913.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 272aa    MW: 28105.2 Da    PI: 6.5828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004913.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063104126123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ Cgk F +   L  H  +H
  Aco004913.1 104 YKCSVCGKAFGSYQALGGHKASH 126
                  9*********9999998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-10104126No hitNo description
Gene3DG3DSA:3.30.160.602.8E-4104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637104126IPR007087Zinc finger, C2H2
PfamPF139123.9E-13104128IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-10163190No hitNo description
PfamPF139121.1E-13167192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515168190IPR007087Zinc finger, C2H2
SMARTSM003550.066168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAIDALERTA IPPPPPPLST EEASEEEEEE EEEEEEEVFP PLEGWAKRKR SKRHSRFFPD  60
HRQPTEEEHL ALCLVMLARG GRYGPHRVSS PPPPQPPPPP PPQYKCSVCG KAFGSYQALG  120
GHKASHRKPI SGDDAPAAIA GAAATSAASG SGSSTGGGGG GGGSEKVHRC SVCSKTFPTG  180
QALGGHKRCH YEGTIGGGGG GGRSASATTV ASEGGSSSHR GFDLNVPAMP EGFEGAKRYF  240
AMAAAAAAAA AEEEEVQSPH PFKKPRLLIP A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150163SGSSTGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091531.10.0zinc finger protein 1-like
TrEMBLA0A199VW341e-125A0A199VW34_ANACO; Zinc finger protein ZAT10
STRINGXP_008792675.14e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-35salt tolerance zinc finger