PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 217aa    MW: 23401.8 Da    PI: 5.3478
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.83.7e-242127197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeer.......................edamsslvyeAeara 69 
                  +C++C+vlr++C++ C+l+p++      p++q++++ +v+k+FG++ +l+ll+++p   r                        ++++sl+yeA+ r+
  Aco004910.1   2 SCNGCRVLRKGCSDTCILRPCLeritdgPQAQAHATLFVAKFFGRASLLSLLSTVPSPSRpenlnscilagedkvhrltcwigAALFRSLLYEACGRT 99 
                  6******************************************************9999999************************************ PP

       DUF260  70 rdPvyGavgvilklqqqleqlkaelall 97 
                   +Pv+Ga g++++++++ +q++++++l 
  Aco004910.1 100 INPVNGASGLLWTGNWDRCQAAVDTVLC 127
                  *********************9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.8091131IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-13270IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-586124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCILR PCLERITDGP QAQAHATLFV AKFFGRASLL SLLSTVPSPS  60
RPENLNSCIL AGEDKVHRLT CWIGAALFRS LLYEACGRTI NPVNGASGLL WTGNWDRCQA  120
AVDTVLCRGA LRPLPDIGAT AADMGDLYGW CRSAEKKRSE LTDDSCDLEL YLMQPRMPRL  180
RGDGEEVLSS EGSVTTADEG CDGAAVEQRV LLNLFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092678.11e-133LOB domain-containing protein 38-like
SwissprotQ9SN239e-50LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A199VWQ81e-143A0A199VWQ8_ANACO; LOB domain-containing protein 38
STRINGGSMUA_Achr2P13440_0012e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-48LOB domain-containing protein 38