PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004886.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 410aa    MW: 44368.7 Da    PI: 4.4344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004886.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-184594255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +grWvAeI+d +    ++ r++lg+f+tae Aa+a+++a+  l+g
  Aco004886.1 45 RYVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEAAARAYDEAACLLRG 94
                 79*******.7*********55....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-1744101No hitNo description
Gene3DG3DSA:3.30.730.102.0E-2745101IPR001471AP2/ERF domain
PROSITE profilePS5103219.99445102IPR001471AP2/ERF domain
SMARTSM003804.0E-3345109IPR001471AP2/ERF domain
PfamPF008474.2E-134594IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1945102IPR016177DNA-binding domain
PRINTSPR003675.8E-84657IPR001471AP2/ERF domain
PRINTSPR003675.8E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MARKRKCSDD EQEPESFNKA ANRCGATATG VWEGGEARAP GGRKRYVGVR QRPSGRWVAE  60
IKDTVQKIRV WLGTFDTAEA AARAYDEAAC LLRGANTRTN FWPCGRPQQP PALPAKIANL  120
LKLRLKARKE ATAHNKQSRP QEITVREDEI EGRCHGGEDD DDDDDFRIDE FLNDPANCAI  180
DLTLDCETDH DDRRLCDIYD AAEPNCPRNG GGEGPGSEFG HKQGGIGGWE EEEGEEGIMD  240
FELMEEAPLT SYDYSPFEMV AELDGVIEED GEEGEEASAI GAVMKRMKYE RKISASLYAL  300
SGISECLRMR VNGGGIGVEG DHLSSLRNAC RRRAHEEEAK VEGGNSQVSN EVGSSSSSSS  360
FSSSSSSPLM TPGSTSSSPP PPHAASDSNG DGDLTLWSSL DLPPICFVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126206e-45CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781042.11e-86ethylene-responsive transcription factor ERN1-like
TrEMBLA0A2H3XAR32e-85A0A2H3XAR3_PHODC; ethylene-responsive transcription factor ERN1-like
STRINGXP_008781042.14e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11