PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004637.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 118aa    MW: 12125.6 Da    PI: 6.9277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004637.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123153123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C +C+++F ++  L  H++ H
  Aco004637.1 31 FACAYCSRRFFTSQALGGHQNAH 53
                 78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-62858No hitNo description
Gene3DG3DSA:3.30.160.607.8E-42957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3023158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAEAPPSSCF FEFLKPAAEE ASAAAAEARS FACAYCSRRF FTSQALGGHQ NAHKRERAAG  60
SRRGLPPSSS SAAVPPPPPP PYGGYVFVHG VPGGAPPPPP VTNAAELDID LDLSLHL*
Functional Description ? help Back to Top
Source Description
UniProtMay function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088107.11e-77zinc finger protein KNUCKLES-like
SwissprotQ9FFX44e-13KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLA0A199WB162e-44A0A199WB16_ANACO; Zinc finger protein 3
STRINGXP_008801133.16e-18(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-10C2H2 family protein
Publications ? help Back to Top
  1. Sun B, et al.
    Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells.
    Science, 2014. 343(6170): p. 1248559
    [PMID:24482483]
  2. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]