PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 379aa    MW: 41298.6 Da    PI: 8.6964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-0581103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Aco004240.1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                  89*******************88 PP

2zf-C2H212.70.00038158180123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Aco004240.1 158 WKCDKCSKRYAVHSDWKAHVKTC 180
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.28E-780103No hitNo description
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
PfamPF121715.7E-581103IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355120123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.28E-7153178No hitNo description
SMARTSM0035590158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MFASAALSNS TSMSEEGSAS SETRAHDFNS LISFLTPTSP SQHLQQSQAK GKKKRSQPGN  60
PDPDAEVVAL SPKTLIATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEGVRK  120
RVYVCPEPSC VHHHPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVH SDWKAHVKTC  180
GTREYRCDCG TLFSRKDSFV THKAFCDALA EESAKLLTTS SSSTTTTITT NPLILDHPFF  240
PFSSLDPTIF TNPNPNPNLN YNPHPPPLLR PYAFHLATTE AAAAAAPPHL SATSLLQRAS  300
AVGPIITGAA SCHVGCADFD AGGLATWHAG DRLTRDFLGV VAGEEAPGGV RDLLPLTCLD  360
LVTAPHYCAQ VGDHTCTNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34154223372Zinc finger protein JACKDAW
5b3h_F4e-34154223372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104060.10.0protein indeterminate-domain 12-like
SwissprotO227591e-116IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A199VH210.0A0A199VH21_ANACO; Protein indeterminate-domain 12
STRINGXP_008788632.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-108indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]