PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003893.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 606aa    MW: 68591.3 Da    PI: 5.5536
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003893.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092576594220
                  EETTTTEEESSHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                  +C+ Cg+sF ++  L  H+
  Aco003893.1 576 SCGTCGESFESRNKLFAHL 594
                  6*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.6E-24587IPR001623DnaJ domain
SuperFamilySSF465651.44E-236122IPR001623DnaJ domain
SMARTSM002711.4E-23776IPR001623DnaJ domain
PROSITE profilePS5007619.977884IPR001623DnaJ domain
CDDcd062571.54E-15873IPR001623DnaJ domain
PfamPF002265.7E-21981IPR001623DnaJ domain
PRINTSPR006255.4E-161028IPR001623DnaJ domain
PRINTSPR006255.4E-162843IPR001623DnaJ domain
PRINTSPR006255.4E-165676IPR001623DnaJ domain
PROSITE patternPS0063606180IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.07E-13306356No hitNo description
SMARTSM004513.2E-6312346IPR003604Zinc finger, U1-type
PfamPF121717.6E-11315340IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003555.1315339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280317339IPR007087Zinc finger, C2H2
SMARTSM003559.8575599IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933575604IPR007087Zinc finger, C2H2
PROSITE patternPS000280577599IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAEPRKRCFY EILGVSRDAS QEEIRSAYKR LALQLHPDKA AAAAASSAAA DDAAVAATAA  60
FQELRHAYEV LSDPKERAYY DSHRSQILFS DAAAAKSHKA SSFADLDLFS FFSNSAFSGF  120
SDTGRGFYKV YGDLFAKVYA KELWFATTFG SGPGAVPPAP LIGNLDSPYE QVTAFYNYWL  180
GFCTVMDFAW VDEYDAMAGP NRRSRRAMEE ENKKLRKKAK REYNDSVRGL AAFVKKRDKR  240
VVDMMRKTKM EEEKRRAAEK ERKREEERKK MERARAYEEP EWSRINEKED VIGFDDDGED  300
DDEKSKKKKK GGEEFYCVAC NKKFKSDKQW KNHEQSKKHR DKVAELKTMF KEEEEVFDEE  360
ERDGDEVFAD FDYEPAPESE DGEAVDELCS DVQDDLKLHE ESVEDEDMEG GDDKSLDTDN  420
EASILESMVS GRKARKSDSL NHQDSAFSSI DHHEIDGENS MANDDTRSRG RRNRASRRRS  480
NYDGYDEAVR TQKDGSQQDE SGHHNRERGA DDNKEGSCLV EEVVTQKKGD RAAKKNQKPK  540
ENQVDGKGAG KTERAGDQNH SSKARKQKAK DAPSNSCGTC GESFESRNKL FAHLGNTGHA  600
MLKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bqz_A1e-12683268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6629470.0KM662947.1 Ananas bracteatus clone 47067 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104436.10.0DNAJ protein JJJ1 homolog isoform X1
TrEMBLM0U7U90.0M0U7U9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-115DNAJ heat shock N-terminal domain-containing protein