PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003869.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 317aa    MW: 34630.3 Da    PI: 6.5882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003869.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021222244123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C+k+F +   L  H r+H
  Aco003869.1 222 HRCPICDKVFGSGQALGGHKRSH 244
                  79**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-41034IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.77E-71033No hitNo description
SMARTSM003551.71133IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-51135IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3251138IPR007087Zinc finger, C2H2
PROSITE patternPS0002801233IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-7156180No hitNo description
SMARTSM0035571161181IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-8161182IPR007087Zinc finger, C2H2
SuperFamilySSF576675.31E-5219245No hitNo description
PfamPF139129.3E-13221244IPR007087Zinc finger, C2H2
SMARTSM003550.011222244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473222244IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MELGGDDKEP HCCRACGKRF PCGRSLGAHM RSHSSPISSF SSDDDGDYEF ANKMTTRDCT  60
NGGSSVTTSS SRTFMELRAC LRLPEPAVPR RAATRRRSRR VASIAAASEV DEEEDVALCL  120
MMLSRDSLSK RSFALERKGE EEFPAKPKKS TGGESEKRAR FACPECNRPF RSYQALGGHR  180
ANRKRINGAG CCSSSSKIPS LPDDSFGAAV ASPESAKKAR AHRCPICDKV FGSGQALGGH  240
KRSHLMASSS DRRVRICSVD DESRDLLDLN LPAPVDDDDD DDDDDDEDSS NVNENVEYKS  300
WWVEGEHKHG SLVGFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104957.10.0zinc finger protein ZAT4-like
TrEMBLA0A199VYM61e-149A0A199VYM6_ANACO; Zinc finger protein ZAT4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-24C2H2-like zinc finger protein