PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003774.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 534aa    MW: 54868.1 Da    PI: 8.3809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003774.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057597123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aco003774.1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                 89*******************88 PP

2zf-C2H213.30.00024151173123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Aco003774.1 151 WKCDKCSKKYAVQSDWKAHAKTC 173
                  58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-77497No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.6E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355230116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MPTEQQENSS VMTASNSASG EASVSSSGPQ QLLPLPPPHP MPPPAKKKRN LPGMPDPEAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE ARKRVYVCPE  120
ATCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESAKTH PSPAPPPPPP APAPAPEEEV PPLRQVVTPP  240
EQQEPENPPG IFQYMPPPST TTIGISAATT SGSNSSGGSG GGGGGGGAAT STTSLFASLF  300
ASVAPSVASA QSTTAFSDLV GAMGRAEPPP ALCLSTNSPA AAAAAAAAAA AALFPNSASS  360
DQCSPFALHP PPPPSPHMSA TALLQKAAQM GAAASGSSFL RGLGLATSVS NPQPQQDQWH  420
HNLDHPEPGP MLSAGLGLGL PYDGAAPGLP ELMMGPSPLV GPKPTTLDLL GLAMGPIGGS  480
AATAGGLSAL ITSIGGGLDM GAGGVQRSNA AAPYGGKPWE GAAERKSNSP AML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36147208364Zinc finger protein JACKDAW
5b3h_F2e-36147208364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545021e-180BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546181e-180BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555781e-180EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104659.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-152IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A199UZ240.0A0A199UZ24_ANACO; Protein indeterminate-domain 1
STRINGXP_008776861.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]