PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003654.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 289aa    MW: 33355.8 Da    PI: 9.2271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003654.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015103125223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C ++++++ +L  H +  H
  Aco003654.1 103 SCSVCFRVYPTSRLLSIHVSEaH 125
                  6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.175100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077100IPR007087Zinc finger, C2H2
SMARTSM0035511102125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
SMARTSM003554.4140165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEMESGSMET REEGSKLGLG FPYWIPSRRR FKPDDLFFAA GNTERELLAK HVALDLTEDE  60
RYQLQKMEVA GANTVFCPIA GCGARLDYLE DFEDHYRTRH TASCSVCFRV YPTSRLLSIH  120
VSEAHDSFFQ AKVARGYPMY ECLVESCGVK LKSYKSRQQH LVDKHKFPTT FEFYKKARPS  180
KHRREKNQRK QALYKSEETK EKYMDVDEKT QKKMHQIYKP KQPKEAKETE MEVEEKIDDL  240
VSAVSKLSTS DSSPSSVSFG HRHARGFAFV PRSIRQSRKQ VSQPEAQG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106416.10.0zinc finger protein 511
RefseqXP_020106417.10.0zinc finger protein 511
TrEMBLA0A199VVH90.0A0A199VVH9_ANACO; Zinc finger protein 511 (Fragment)
STRINGXP_008807434.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-94zinc ion binding;nucleic acid binding;zinc ion binding