PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003476.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 752aa    MW: 80852.7 Da    PI: 6.8843
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003476.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-11285341155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Aco003476.1 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 341
                  57*******************4444.2455535555.779999**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-14285351IPR016177DNA-binding domain
PfamPF008471.3E-8285341IPR001471AP2/ERF domain
CDDcd000181.50E-19285351No hitNo description
SMARTSM003801.1E-22286355IPR001471AP2/ERF domain
PROSITE profilePS5103217.319286349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-12286350IPR001471AP2/ERF domain
CDDcd000185.51E-18384485No hitNo description
SuperFamilySSF541712.09E-5384418IPR016177DNA-binding domain
SMARTSM003805.4E-19385489IPR001471AP2/ERF domain
PROSITE profilePS5103213.142385483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-4385418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-6458484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MASMNNWLGF SLSPQELQPS HDSHQTQHPS PSLISGADDV SADCYGLSAA AADSSLAPPP  60
LSIPTLRPDG PFCIGHHQQD WSMKSSMDVD NGPPKLEDFL SGHSFSEHDG RKIPSDYMFS  120
NCSINITTLT QDNNHCGLFN NNNNNNTNNS NSGGGNSNSN STIGLSMIKN WLRSQPVPHN  180
QHSDMGHKSG DGGGGGGGGC NALVGSVDHV ALGGGRGGSQ SLSLSMSTGS QSSSPLPLMG  240
SGGGGESSSS ENKNKGSVGS GVDEQSGAIE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKEVEEM  360
KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSKSN  420
PPQNKVNSDS NISVPLSLSF EYSNRLKKIP TKNPNAGTQE EAAEAYDIAA IKFRGLNAVT  480
NFDMSRYDVK SILESSTLPI GGAAKRLKDV SEHTEESVDG LRMITTDGDN RFNSQITEGI  540
SGSTTAYGWP GIAFAQAQPV GMHYPYPQQP VRGWCKPEHE GMAVAAAAAQ SLQELQQLHL  600
GSSTHNFFQR PPPPPLMNLD SSPSMEHSTG SNSVLYSGSY QGVVGADNCG YAMPISTMLV  660
DQSQNNNHQG SSSYGESGHE GNMHVGVDPY GGRNVYFMNQ QTMGGLKENG FEQESNGCNN  720
WVQNPTQAIA PRGNNVAVCH GAPLFTVWND A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066045e-50AL606604.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence.
GenBankAL7316385e-50AL731638.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence.
GenBankAP0149605e-50AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-50CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107273.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A199V3T70.0A0A199V3T7_ANACO; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein