PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 316aa    MW: 34281.8 Da    PI: 8.5005
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002688.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.8e-34201112102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++e +e++++isw e+g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g++ ll++i+
   Aco002688.1  20 FLMKTHEMVEAAETDDVISWGEEGRSFVVWKPVEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVVPHR---------WEFANESFRRGEQGLLSSIR 107
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Aco002688.1 108 RRKA 111
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3613103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3315109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5316109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTHKGKGSGS GSGGSGPAPF LMKTHEMVEA AETDDVISWG EEGRSFVVWK PVEFARDLLP  60
LHFKHNNFSS FVRQLNTYGF RKVVPHRWEF ANESFRRGEQ GLLSSIRRRK AAPPLPQSPQ  120
PGTSGCSAQL LPPPPPLLFP PSSVTNSGDV HSSSSTSSPS PPPPPTQKLA QLSHENEQLK  180
KHNQILSTEL AQAKQQCDEL LGFLSKFVDV RGLNFDLLMQ ENAAAEETTK EREDAVERKE  240
EAKEGKLKLF GVILKGLEVG EGNKGGMRKR GLCEEGDACG VDERRPMKMG FGAPPWMGVS  300
AAAAAVQQRG GKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201110917129Heat shock factor protein 1
5d5v_B1e-201110917129Heat shock factor protein 1
5d5v_D1e-201110917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614332e-78AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence.
GenBankHQ8588292e-78HQ858829.1 Oryza sativa Japonica Group isolate UT1328 HSF-BDB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089914.10.0heat stress transcription factor B-1-like
SwissprotQ67TP91e-83HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A199V5F41e-179A0A199V5F4_ANACO; Heat stress transcription factor B-1
STRINGGSMUA_Achr10P30120_0015e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-58heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]