PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 334aa    MW: 36533.7 Da    PI: 8.3035
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002684.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.6e-33241252103
                   HHHHHHHHHCTGGGTTTSEES.SSS........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                   Fl+k+y++++d+++++++sw  ++g        ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg
   Aco002684.1  24 FLTKTYQLVDDPATDHVVSWGdDDGdgggggraHTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKG 111
                   9********************5555889999999****************************************999.........*********** PP

                   XXXXXXXXXXXXXX CS
  HSF_DNA-bind  90 kkellekikrkkse 103
                   +k+ll++i+r+k +
   Aco002684.1 112 QKHLLCEIQRRKAT 125
                   ***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3516117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5520122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3121122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2924122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGCWEGCGG GGGGEAQKPV PAPFLTKTYQ LVDDPATDHV VSWGDDDGDG GGGGRAHTFV  60
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKVVPER WEFANEFFRK GQKHLLCEIQ  120
RRKATTSAST SSPSSPLHFP PLFATLDHHH HHHHLHHHHH HHHHDRRYNH INHPPRLLSL  180
PASPAGDSGG TGSADAATTL MAENERLRRS NAALLSELAH MKRLYNDIIY FVQNHVQPVA  240
PSFTASPPPR PPPLRRSREP ELAAVNSGSA TSSSSLTVAE EPSPTTPPAA RRLRLFGVAL  300
KCGSALHRDE PGSPAARQEA AGFDTIASSP PTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-202012717125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091074.10.0heat stress transcription factor B-4c-like
SwissprotQ9C6352e-84HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A199V5D31e-165A0A199V5D3_ANACO; Heat stress transcription factor B-4
STRINGXP_008779895.16e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-56heat shock transcription factor B4