PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002521.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 152aa    MW: 15611.6 Da    PI: 10.2336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002521.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-051638123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++Cg+ F ++  L  H++ H
  Aco002521.1 16 FECSYCGRDFANSQALGGHQNAH 38
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-71343No hitNo description
Gene3DG3DSA:3.30.160.603.3E-51442IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.5491643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGEAAATDHA AARRRFECSY CGRDFANSQA LGGHQNAHKK ERHRAAAAAA AHLRAAPPLR  60
RRAPLAAEPS SPAPERALWC GPGAAAAAGA PLHARALVPP PALAWSRVAL VPSWPPPFAV  120
DRTAGDSVEH GVDLHLTLAP SSTSSSFSSP P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086088.11e-100zinc finger protein 6-like
TrEMBLA0A1U8AK381e-18A0A1U8AK38_NELNU; zinc finger protein 6-like
STRINGXP_010268055.12e-19(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1235656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.18e-09zinc finger protein 5