PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002181.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 261aa    MW: 27697.1 Da    PI: 8.0529
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002181.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-3041140188
       DUF260   1 aCaaCkvlrrkCakdCvlapyf...........paeqpkkfanvhklFGasnvlkllk.alpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                  +C aCk+lrr+Ca++Cv+ap+f           +++++++fa+vhk+FGasnv kll+ ++p+ +++dam +++yeA+ar+ dPvyG+v++il+lq+q
  Aco002181.1  41 PCGACKFLRRRCAAGCVFAPHFgggeqqqqsggASSSAARFAAVHKVFGASNVAKLLTgQVPPARHRDAMLTICYEAQARLADPVYGCVSTILALQHQ 138
                  7************************9999888777778*****************99835699999******************************99 PP

       DUF260  87 le 88 
                   +
  Aco002181.1 139 AS 140
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576125No hitNo description
PROSITE profilePS5089117.83340155IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3341140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDAKRSCSSR SRSRSSSNSS SSSSCVSGNG IAGGGEERRE PCGACKFLRR RCAAGCVFAP  60
HFGGGEQQQQ SGGASSSAAR FAAVHKVFGA SNVAKLLTGQ VPPARHRDAM LTICYEAQAR  120
LADPVYGCVS TILALQHQAS PQFSARCMSC RAHAISSVQL IKYMCNVTLL QAELSIIQSQ  180
LLNSKLALAT AHQSSQNFTA LQPAYSNNSS MSNNLMNPSR LPISALDIVD NEPSSRVLEL  240
AKPLQDEDDE EESQNLAEPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-28411381196LOB family transfactor Ramosa2.1
5ly0_B3e-28411381196LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6655231e-136KM665523.1 Ananas bracteatus clone 50661b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086177.11e-106LOB domain-containing protein 20
SwissprotQ9SRV31e-46LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A199VXF80.0A0A199VXF8_ANACO; LOB domain-containing protein 20 (Fragment)
STRINGXP_008777051.12e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-40LOB domain-containing protein 20