PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001482.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 193aa    MW: 20910.5 Da    PI: 7.3102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001482.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-065375123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ Cg++F++   L  H+r+H
  Aco001482.1 53 FECKTCGRRFPSFQALGGHMRRH 75
                 89********************9 PP

2zf-C2H210.80.0016117139123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F     L  H+r+H
  Aco001482.1 117 HECSICGLEFALGQALGGHMRRH 139
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.14E-105175No hitNo description
Gene3DG3DSA:3.30.160.608.2E-45175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-135277IPR007087Zinc finger, C2H2
SMARTSM003550.00285375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.725380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576673.14E-10112139No hitNo description
PfamPF139124.2E-10116141IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058117144IPR007087Zinc finger, C2H2
SMARTSM003550.28117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKRHRFPDRE VGEVEVESIN MANMLMFLSR GDGGGGGSGY GGGETDSNSQ RVFECKTCGR  60
RFPSFQALGG HMRRHRAAVA AAEEEALGGH RASHKKPRLS GDSAEAAEAA VAKPRVHECS  120
ICGLEFALGQ ALGGHMRRHR AAVAAAEEEV EGCGNFRIVL EKKHERKGED EKRGSWLDLD  180
LNMAPPLVDF FH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6617728e-92KM661772.1 Ananas bracteatus clone 44663 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107896.13e-92zinc finger protein ZAT12-like
TrEMBLA0A199UV176e-84A0A199UV17_ANACO; Zinc finger protein ZAT5
STRINGXP_008807730.19e-42(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-18C2H2 family protein