PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 287aa    MW: 32381 Da    PI: 7.0417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001423.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000416991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C + F++   L  H+++H
  Aco001423.1 69 YACSFCRREFRSAQALGGHMNVH 91
                 89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.25E-66695No hitNo description
PfamPF139122.1E-56992IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1776996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MHSEKEGQEE GYRMRRRKKP SDEGPDLFHP PMRAITLNSS SYKASWEEKA FTEDSEGLLG  60
VYTWPPRSYA CSFCRREFRS AQALGGHMNV HRRDRARLKL SSSSIGDNQD SPDDHGRDLY  120
PNAPQATLEC SSKPNPNSLC GDIASPLSSH NRDLVVSAAT EIWSEHIFIY PPYSLPNVRH  180
NKKDTTLSFT VQCSDEDPKT IEPPRSIQEL AHGRDNLGCR PRRYRDEDSE ETINSKRSKT  240
NHTISPLFAR SFAGKGQQLQ PEVLKLCSNS VEELDLELRL GDPPKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-126491229superman protein
2l1o_A1e-126491229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108955.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A199VSN00.0A0A199VSN0_ANACO; Transcriptional regulator SUPERMAN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-24C2H2 family protein