PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001332.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 362aa    MW: 38923.6 Da    PI: 9.4193
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001332.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34381302102
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i
   Aco001332.1  38 FLTKTYQLVDDPSTDHVVSWGdDRVSTFVVWRPPEFARDILPNFFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKHLLCEI 125
                   9********************6667*****************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   +r+ks
   Aco001332.1 126 HRRKS 130
                   ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3628123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5734128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3135128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-3038128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSERYWEVGG GGGGGGNVGG AGAGAGAAEA QKAVPAPFLT KTYQLVDDPS TDHVVSWGDD  60
RVSTFVVWRP PEFARDILPN FFKHNNFSSF VRQLNTYGFR KVVPERWEFA NEFFRKGEKH  120
LLCEIHRRKS PAASASSSSS SFPSPSSPHL FPSPQHLPLF HHHHHLPLPP WTDSPSPRLL  180
VLGPTPTASA SASANVGGAA ALVEENERLR RSNAALVAEL AHMRKLYNDI IYFVQNHVQP  240
VAPSSAASPL VAARGLRGLV DQRRSAATKP ELNSASTTSS SSLTIADEPS PPPPPPPPQN  300
QNDNGESSSA RPKLFGVPLN GCSPKRPLNR DEPTSPSTKP RLVLENEDLG FNLMPRSPLS  360
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-203412826129Heat shock factor protein 1
5d5v_B5e-203412826129Heat shock factor protein 1
5d5v_D5e-203412826129Heat shock factor protein 1
5hdg_A3e-20341287110Heat shock factor protein 1
5hdn_A3e-20341287110Heat shock factor protein 1
5hdn_B3e-20341287110Heat shock factor protein 1
5hdn_C3e-20341287110Heat shock factor protein 1
5hdn_D3e-20341287110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560026e-91AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113522.10.0heat stress transcription factor B-4c-like
SwissprotQ67U941e-98HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A199UN151e-145A0A199UN15_ANACO; Heat stress transcription factor B-4c
STRINGGSMUA_Achr9P15370_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-61heat shock transcription factor B4