PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000392.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family BES1
Protein Properties Length: 349aa    MW: 36774.8 Da    PI: 8.3125
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.19.9e-6421481149
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslqss 97 
                  ++++r ptw+ErEnnkrRERrRRaiaakiyaGLR +Gny+lpk++DnneVlkALc+eAGw+ve+DGttyr g+kp+ + +++ag  as sp+ s+q  
  Aco000392.1   2 TSGTRVPTWRERENNKRRERRRRAIAAKIYAGLRTYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRTGCKPPpSPTDVAGGAASPSPCCSYQ-- 97 
                  5899************************************************************************999*****************.. PP

       DUF822  98 lkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlslvsss 149
                        +sp++sy++sp+sssfpsp+s+  i+  ++     +sl+p+l++ls++s+s
  Aco000392.1  98 ------PSPIASYNPSPASSSFPSPKSSPYITQPNSfpdvnNSLIPWLKTLSSSSAS 148
                  ......*************************9998899**9*********9986655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.9E-653143IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTSGTRVPTW RERENNKRRE RRRRAIAAKI YAGLRTYGNY NLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RTGCKPPPSP TDVAGGAASP SPCCSYQPSP IASYNPSPAS SSFPSPKSSP  120
YITQPNSFPD VNNSLIPWLK TLSSSSASSS AASFPPLPHL YIPGGSISAP VTPPLSSPTA  180
RTPRMKTDWD ERHAQPSWAG GANYTSVPNS TPSSPGRSVF PDPAWFAGFQ ISSAGPSSPT  240
RSLVASNPFG LFKEAIVASA GVSRGASRMC TPGQSGTCSP VMPGAPSCAD VLMPDIRVSD  300
EFAFGSSSSD TNRMAGPVKA WEGERIHEEC GSDDLELTLG NSSTRADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-24685372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-24685372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-24685372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-24685372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012292e-63AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020100590.10.0protein BZR1 homolog 3-like
SwissprotQ5Z9E51e-135BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A199W0130.0A0A199W013_ANACO; Protein BZR 3
STRINGBRADI1G38180.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.14e-93BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]