PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn388061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bZIP
Protein Properties Length: 365aa    MW: 41080.4 Da    PI: 6.6868
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn388061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-1076114439
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 
                  k++rr+++NReAAr+sR+RKka++++Le+   k ++Le
  Achn388061  76 EKVQRRLAQNREAARKSRLRKKAYVQQLETyrlKLAQLE 114
                 699*************************98333444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-871121No hitNo description
SMARTSM003384.7E-873155IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.11775117IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-777117No hitNo description
PfamPF001709.7E-877112IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141443.8E-28165238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSSTSTQFAT SARMGMYDPI HQVSMWESMF RGDIIPNSDA SVPVQIDASL GNKAEYASYD  60
SLDPSENHPE ANKMSEKVQR RLAQNREAAR KSRLRKKAYV QQLETYRLKL AQLEQELTRA  120
RQQGVFIGGA IDTGHLGFSG PVNTGIATFE MEYAHWVEEQ QRHNCELRKV LQAHISDIEL  180
RILVENGLNH YDNLFRMKAE AAKADAFYLI SGTWRTSVEG FFLWLGGFRP SELLNVLMPQ  240
IEPLTDQQHM AVTNLRQSSQ QAEDALSQGI DQLQQTLAQS IAADPTGLGN YGSPMASAIE  300
KLDTLENFVS QADHLRQQTL HQLSRILTIR QTARGLLALG EYFQRLRALS LLWASRPREP  360
AYNI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127608.10.0transcription factor TGA1-like
RefseqXP_028127609.10.0transcription factor TGA1-like
RefseqXP_028127610.10.0transcription factor TGA1-like
RefseqXP_028127611.10.0transcription factor TGA1-like
RefseqXP_028127612.10.0transcription factor TGA1-like
SwissprotQ391621e-151TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A2R6R2R40.0A0A2R6R2R4_ACTCH; Transcription factor like
STRINGVIT_18s0001g04470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-144TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]