PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn385251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 222aa    MW: 24016.5 Da    PI: 6.6824
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn385251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.87.9e-342197269
         TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssss 69
                a +kdrhsk+ T++g+RdRR+R+sa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l+++         ++++
  Achn385251 21 ASRKDRHSKVFTAKGPRDRRIRISAHTAIQFYDIQDRLGYDRPSKAVDWLMKKAKTAIDNLAELppwnpsdsgTNPA 97
                789*************************************************************7766555532222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-312292IPR005333Transcription factor, TCP
PROSITE profilePS5136931.2062381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKNSGGGEIV QVQGGHILRS ASRKDRHSKV FTAKGPRDRR IRISAHTAIQ FYDIQDRLGY  60
DRPSKAVDWL MKKAKTAIDN LAELPPWNPS DSGTNPAPSE ITVSPPNLES TSEYGFQIQG  120
HFGQTTDIQP VGDPMKSFFP ASTDRQDLCL SLHSLRDPSS DPSPTDRALF QAAAPVDFQA  180
NYAAWNGGGG TGENIFGAAQ PFFSQRGDPS VQSFTSGSYV E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657020.15e-63PREDICTED: transcription factor TCP4
RefseqXP_010657021.15e-63PREDICTED: transcription factor TCP4
RefseqXP_010657022.15e-63PREDICTED: transcription factor TCP4
RefseqXP_010657023.15e-63PREDICTED: transcription factor TCP4
RefseqXP_010657024.15e-63PREDICTED: transcription factor TCP4
SwissprotQ9MAH83e-49TCP3_ARATH; Transcription factor TCP3
TrEMBLE0CTN32e-63E0CTN3_VITVI; Putative uncharacterized protein
STRINGVIT_12s0028g02520.t016e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-50TCP family protein