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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn385251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 24016.5 Da PI: 6.6824 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.8 | 7.9e-34 | 21 | 97 | 2 | 69 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssss 69 a +kdrhsk+ T++g+RdRR+R+sa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l+++ ++++ Achn385251 21 ASRKDRHSKVFTAKGPRDRRIRISAHTAIQFYDIQDRLGYDRPSKAVDWLMKKAKTAIDNLAELppwnpsdsgTNPA 97 789*************************************************************7766555532222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-31 | 22 | 92 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.206 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKNSGGGEIV QVQGGHILRS ASRKDRHSKV FTAKGPRDRR IRISAHTAIQ FYDIQDRLGY 60 DRPSKAVDWL MKKAKTAIDN LAELPPWNPS DSGTNPAPSE ITVSPPNLES TSEYGFQIQG 120 HFGQTTDIQP VGDPMKSFFP ASTDRQDLCL SLHSLRDPSS DPSPTDRALF QAAAPVDFQA 180 NYAAWNGGGG TGENIFGAAQ PFFSQRGDPS VQSFTSGSYV E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657020.1 | 5e-63 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657021.1 | 5e-63 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657022.1 | 5e-63 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657023.1 | 5e-63 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657024.1 | 5e-63 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q9MAH8 | 3e-49 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | E0CTN3 | 2e-63 | E0CTN3_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_12s0028g02520.t01 | 6e-63 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6607 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-50 | TCP family protein |