PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn379451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 322aa    MW: 34330.1 Da    PI: 10.1071
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn379451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.5e-35781741103
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssssa 82 
                 aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai + tgt                 ++++as++         
  Achn379451  78 AAVKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIVASTGTgtvpaiamsvggtlkipTTTPASST--------- 167
                 689**************************************************************3333333333333333322222122......... PP

         TCP  83 snsssgkaaksaakskksqks 103
                               ++k++++
  Achn379451 168 --------------KQKRKHP 174
                 ..............1111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-2884160IPR005333Transcription factor, TCP
PROSITE profilePS5136925.15985139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTSLMKPERE EHDNKCTADN RNNGGGDTDS VTRTAELHWK QTPVAVLKEE KDVEERPAAV  60
AMMVPVAMPI PMPVQTAAAV KRPSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS  120
DGETVRWLLE HAEPAIVAST GTGTVPAIAM SVGGTLKIPT TTPASSTKQK RKHPSSTELV  180
DANSPTTASP PSAWAPLGGA PQPQTLIPMW AIPSNSGPTF WIVPPPSTAV AGPSNQPQIW  240
TPLFNISARP ISSFVASTQQ TPLEIQSLSS SITTSSTIAA KSEKSASISA PSTSSSGKTA  300
QMLREFSMEI CDKREVQFLK P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272896.11e-106PREDICTED: transcription factor TCP9
SwissprotO646471e-67TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2R6QS790.0A0A2R6QS79_ACTCH; Transcription factor like
STRINGVIT_15s0048g01150.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-61TCP family protein