PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn370431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 871aa    MW: 98484 Da    PI: 6.8407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn370431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.7e-1579153290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y++YA++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++              C+a l++++++ + w+vtk++++HnH+++
  Achn370431  79 LYDAYARRVGFSTHVGQYTRTKPDGPIVTWDFACSREVFKRKNVES--------------CNAVLRIERKDLDSWVVTKFVEDHNHSMV 153
                 69**************************************999877..............**************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1279153IPR004330FAR1 DNA binding domain
PfamPF105516.3E-30285377IPR018289MULE transposase domain
PROSITE profilePS5096611.362562598IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-11564596IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MKTQGVDITH SSGMDVGVVG TEGDKREKNG KANSSRNMGE NQGMAENSSD REAHNQDNDE  60
NTKLYVGMEF ESEEAAKTLY DAYARRVGFS THVGQYTRTK PDGPIVTWDF ACSREVFKRK  120
NVESCNAVLR IERKDLDSWV VTKFVEDHNH SMVSPRKVHH LRPRRHFAGA TKNVVETVDA  180
PSDVFVSMDG NHVSYDPNRG VRSASPVETN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN  240
YFKKMQAENP GFYYAIQLDD DNRMTNIFWA DARSRTAYSH FGDTVIFDTM YRPNQFLVPF  300
APFTGVNHHG QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVS  360
QVFPGTRHCI CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWGSLLDR  420
YELRKNEWLQ AVYHARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT TIPMFFKQYE  480
RALENSLERE IEADYDTICT TLVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN  540
IEGDGVVSKF RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCRHI LTVFTVTNVL  600
TLPPHYILNR WTRNARIGFG SMEHDANNQC IESLTSRFKN LCREAIKYAE EGAIAAETYN  660
AAMTALRDGA RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDTS PPLWPWQDVM  720
PQHFNLNDVG VPIADLNQPT IAPTSVSRDD GPDKTVVLTC FKSMTWVIED KNSTSSKVAV  780
INLKLQDYGK TPSGETEVQF RLTKVTLEPM LKSMAYISQQ LSASANRVAV INLKLQDTKT  840
TTGETEVKFQ VSRDTLGSML RSMAYIREQL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099450.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X2
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6R1D80.0A0A2R6R1D8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]