PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn362831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 158aa    MW: 17231.5 Da    PI: 9.7927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn362831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-20858256
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Achn362831  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAAMAYDGAARSLRGA 58
                6********.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-13857IPR001471AP2/ERF domain
PROSITE profilePS5103222.787865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-32866IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22866IPR016177DNA-binding domain
SMARTSM003808.4E-35871IPR001471AP2/ERF domain
CDDcd000182.53E-29865No hitNo description
PRINTSPR003673.7E-11920IPR001471AP2/ERF domain
PRINTSPR003673.7E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSSSREDHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAAMAYDG AARSLRGAKA  60
KTNFPQPHPL PELSLDLNLA ADQHWASPAG RLVIGEFLHT GVLKEVRSNG ELTVNDGGGG  120
LSSVELPAAE KSAPAGYFGV FRRGLAIDLN KPPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21865260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21865563ATERF1
3gcc_A3e-21865563ATERF1
5wx9_A1e-209701577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9077220.0KC907722.1 Actinidia chinensis clone FL4 ethylene response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096343.18e-72ethylene-responsive transcription factor 12
SwissprotQ94ID61e-44ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A2R6QA711e-110A0A2R6QA71_ACTCH; Ethylene-responsive transcription factor
TrEMBLS5W9101e-110S5W910_ACTCH; Ethylene response factor
STRINGVIT_10s0003g00130.t012e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-47ERF domain protein 12