PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn360501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 734aa    MW: 84619.6 Da    PI: 7.0157
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn360501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1263.1e-081952592589
        FAR1  25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 ++++ +++    +egkr+++k++ +   ++r+etr gC a ++vk  + ++++ v +++  HnH +
  Achn360501 195 DDNFFNNNVPIEEEGKRRKDKRD-HMYTSHRPETRFGCLAWMNVKYCRpTEQFDVVEFNPVHNHIV 259
                 55555566666789999999999.89999*******************9***************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-4204259IPR004330FAR1 DNA binding domain
PfamPF105511.2E-31382476IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MATALSFASV TVNLHPHHHR VIFRPNPRIV VYKFRCSGDN PTSSTSTKSD SEPEKNVLLK  60
MAWYSSELLG IAASFFRSPS NVEASDRDLK LAVEASGAVD RALVVGTIKE DFERSYFVTG  120
NLTLNAYEEN CEFADPAGSF RGLRRFKRNC TNFGSLIEKS NMKLMKWEDF EVLDIDGNYA  180
RDDCDSRRKL EFKDDDNFFN NNVPIEEEGK RRKDKRDHMY TSHRPETRFG CLAWMNVKYC  240
RPTEQFDVVE FNPVHNHIVS TPSKTHLHKS HRKFGVAQAA IADMANDCGI APKATVAFMA  300
RQVGGRENLG FIPQDYKNYL RSKRTVQMKI GDTGGVLEYL QKMQLQDPNF FYAIQVDEDD  360
LITNIFWADA KMMADYAHFG DVVSFDTTYR KNKNGRPFAM FLGVNHHKQT VVFGAALLYA  420
EDADSFIWLF DTFAKAMGGK TPKTILTDQD SVMAKALATQ WPETIHRLCI WHIYQNAASK  480
LSGVFAIFQD FSKDFSKCIY DYEDEDEFIS AWNAMLERYN LQDNDWLKRM FNQKEKWALV  540
YGIQTFCADM TTTQRSESMN SLLKRYASYN NDLLQFFQHF QRLVDDRRYE ELKANFRATQ  600
STPFLSFPIE MLKHAARIYT PEVFNLFEKE LRKAHDCNFN RLGDNETITE YDVSPFGKDQ  660
HHLVTYDSST HMVSCSCLVK RENGIIKPIR YEDLGTRKIA FLTQNGHKLN DLNLQYQLKE  720
EPTDPSPPTK GPY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652765.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6QX940.0A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGXP_008246048.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5