PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn357831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 106aa    MW: 11759.2 Da    PI: 10.2675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn357831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.4e-101559344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT++  +l+ +a +++ ++   +W  +ar +g g++++++k ++
       Achn357831 15 SWTPQQNKLFEQALARYDKDtpdRWQNVARAVGGGKSAEEVKQHY 59
                     7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-41064IPR009057Homeodomain-like
PROSITE profilePS512939.8921167IPR017884SANT domain
SMARTSM007178.4E-91265IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-121470IPR009057Homeodomain-like
PfamPF002498.4E-81559IPR001005SANT/Myb domain
CDDcd001673.40E-61663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGSSSLSSRR SSGSSWTPQQ NKLFEQALAR YDKDTPDRWQ NVARAVGGGK SAEEVKQHYD  60
LLLEDLVRIE TGRVPIPNYR GNANERIKGT GYANHIPIVK KLISF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-29680174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836815.12e-41PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1735e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6R1M06e-55A0A2R6R1M0_ACTCH; Protein RADIALIS-like (Fragment)
STRINGMigut.B00229.1.p7e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-33RAD-like 6