PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn352121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 325aa    MW: 34563.3 Da    PI: 10.2522
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn352121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.6e-37781871114
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaksk 98 
                 aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai ++tgt++ +a ++   ++ + s+        a++a  +k
  Achn352121  78 AAVKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIVAATGTGTVPAIAMsVGGALKISNT-----TTASAASATK 171
                 689**************************************************************9999955532222222222.....1122222223 PP

         TCP  99 ksqksaasalnlakes 114
                 +++k++++  n++++s
  Achn352121 172 QKRKRPSNSDNVDANS 187
                 3333333334444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2984180IPR005333Transcription factor, TCP
PROSITE profilePS5136925.97285139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSLMKPERE EHDNKCTADN RNNGGGDTDS VTRTAELHWK QTPVAVLKEE KDVEERPAAV  60
AMMVPVAMPI PMPVQTAAAV KRPSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS  120
DGETVRWLLE HAEPAIVAAT GTGTVPAIAM SVGGALKISN TTTASAASAT KQKRKRPSNS  180
DNVDANSPTT ASPPTAWAPL AGAPQPQTLI PMWAIQSNSG PTFWIVPPTA TAVAGPSNQP  240
QIWTPLINIS ARPISSFVAS TQQTPLEIQS LSSTITTSST IGAKSEKSAS ISAPSTSSSG  300
KTAHMLREFS MEICDKREVQ FMKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272896.11e-107PREDICTED: transcription factor TCP9
SwissprotO646478e-68TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2R6QS790.0A0A2R6QS79_ACTCH; Transcription factor like
STRINGVIT_15s0048g01150.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-59TCP family protein