PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn337841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 497aa    MW: 56295.3 Da    PI: 4.4092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn337841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS144.88.3e-451294953373
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +c ea++s++++l++ +L rl+e a p+g++ qRl+ y+ + L +              ++e++    ++  aa+++f+++ P+ +f+h++aN+ 
  Achn337841 129 HLLNACGEAMESQNTHLVEVILRRLEEKACPRGSAAQRLVYYLIQSLDEDFDY---------LMQEAR----KNYEAAFRAFYQILPYGRFAHFVANSS 214
                 89**********************************************99987.........223332....345578999****************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 Ileav ++ e + i+Dfd+++G+QWp+L++aL ++ +g  +++i  v+ ++ +   s ++ e+t+erL + A++ gv++e   + ++ l +   ++ ++
  Achn337841 215 ILEAVPEDaEIIRIVDFDMGEGVQWPPLIEALGNQHRGVRQIQIVSVKIHDFNsmpSFQNFEKTKERLCEHASSSGVQLEVGEVDMEGLVSEMKKMENC 313
                 *****8885888*********************************99885555779999***********************98444444333344467 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvks.l.........sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerik 284
                  ++E+la n+++ l ++ +++ s   + +e+Lk+ ++ +         +  v+++ +  +  +   F   f   l   +al++s+e +++++  e+ri 
  Achn337841 314 GRREMLAFNCMVGLPHMGRHRSSR--HVEEFLKIAQEsIglrnwngfrNNGVITFGDGQTMSDYRGFGSFFEAQLGRATALLESMEGQISSHLkEARIA 410
                 77***************9444443..34777777654212232233334568899999999999*********************99988776589999 PP

        GRAS 285 vErellgreivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaW 373
                 +E  ++++ ++++ + e+ e        + Wr +l  + G+ + ++s +++++ak l+r+ +   y +  e   ++++vl+  + pLv vS W
  Achn337841 411 MECLFVAPYVSSLACFENPE-------ERDWRGMLPpKIGLDAWKMSRDTVAEAKELVREGD-SLYWIGTEgeiENQVVLCFLGTPLVRVSTW 495
                 99999999999988888887.......589*****736**********************99.458888554559****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.828101474IPR005202Transcription factor GRAS
PfamPF035142.9E-42129495IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEMMHPPSWS YSSLDEVGFH VLDMDSDSAN FGSSSSFFSP PMYYESQRFQ NLEESTSSEK  60
QSFDEVEGFL NWMEIENGNP SSLCTTEETE SSSPSMPSRE ASIDVSSLEK PLVFPREDME  120
LDYELSIPHL LNACGEAMES QNTHLVEVIL RRLEEKACPR GSAAQRLVYY LIQSLDEDFD  180
YLMQEARKNY EAAFRAFYQI LPYGRFAHFV ANSSILEAVP EDAEIIRIVD FDMGEGVQWP  240
PLIEALGNQH RGVRQIQIVS VKIHDFNSMP SFQNFEKTKE RLCEHASSSG VQLEVGEVDM  300
EGLVSEMKKM ENCGRREMLA FNCMVGLPHM GRHRSSRHVE EFLKIAQESI GLRNWNGFRN  360
NGVITFGDGQ TMSDYRGFGS FFEAQLGRAT ALLESMEGQI SSHLKEARIA MECLFVAPYV  420
SSLACFENPE ERDWRGMLPP KIGLDAWKMS RDTVAEAKEL VREGDSLYWI GTEGEIENQV  480
VLCFLGTPLV RVSTWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1213432426220Protein SCARECROW
5b3h_A4e-1213432425219Protein SCARECROW
5b3h_D4e-1213432425219Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108393.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6PPY40.0A0A2R6PPY4_ACTCH; Nodulation-signaling pathway 2 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.16e-17GRAS family protein