PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn311891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 195aa    MW: 20574.2 Da    PI: 7.1283
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn311891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71e-3430105381
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 
                  k  ++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +  ++  +      +
  Achn311891  30 RKSGSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPTAAVstS-----TA 105
                 5667889********************************************************66665333111.....11 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3034122IPR005333Transcription factor, TCP
PROSITE profilePS5136926.7463589IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVLQFSSHDS SPQNHTAIAT ATAVTVTPAR KSGSSRDRHT KVNGRGRRVR MPALCAARIF  60
QLTRELGHRS DGETIEWLLR HAEPSIIAAT GTGTVPTAAV STSTAAPLSS TSASLSAFSS  120
IAQPAASVPG GYVTPAMFAV APPSCRLDLC PPPSMGFEFS SNGYRHMPFT ALLLQPAVDD  180
AEDREEEVLE EQKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053292.19e-70transcription factor TCP11-like
SwissprotQ9SJK72e-41TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A2R6Q9M11e-104A0A2R6Q9M1_ACTCH; Transcription factor like
STRINGVIT_08s0040g01600.t014e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.14e-36TCP family protein