PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn299891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 247aa    MW: 27830.4 Da    PI: 6.5114
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn299891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.84.9e-56701731101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  Achn299891  70 QLQSFWANQfqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 168
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  Achn299891 169 PREDL 173
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3347164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.6E-3884156IPR009072Histone-fold
PfamPF008081.2E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDQHGSSSQM PYSVSPYPAN QMMRPSATTS VGPIQSPQTT GTSTSPAQLA QHQLAYQHIH  60
QQQQQQLQQQ LQSFWANQFQ EIEQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVVFA  120
RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  180
IPRALPVRGP TEGLPYYYMP QHGAQVGAPG MFMGKPVDQS LYGQSPHPYT TAQQMWPQQQ  240
QPPPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-42561704119HapE
4g92_C8e-42561704119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791101.11e-120PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_009791102.11e-120PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_016515356.11e-120PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_016515363.11e-120PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B22e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM1AHZ01e-120M1AHZ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232091e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-83nuclear factor Y, subunit C9