PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SBP
Protein Properties Length: 364aa    MW: 39765.5 Da    PI: 7.9563
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP97.21.5e-3090159278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC+adls+++eyhrrhkvCe+hsk+++v++ g +qr       fh+l+efDe+krsCr+rL++hn+rrrk+q+
  Achn298021  90 CLVDGCQADLSSCREYHRRHKVCEKHSKTAEVTIGGNKQR-------FHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 159
                 **************************************97.......7**************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-2386144IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.13687157IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-2988162IPR004333Transcription factor, SBP-box
PfamPF031101.4E-2090156IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDWNLKTPSW DLSEFEKETS PNIGSVSGSS SYGGQEMKGD FSVDLKLGRV ANVVNESADN  60
LQVPSVPKMV SLPPKRARAV NNGVLQIASC LVDGCQADLS SCREYHRRHK VCEKHSKTAE  120
VTIGGNKQRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE PLSRSGSFLS NYQGTRLYPF  180
SNPEVYPTAT LANPTWAGVV TTKQEAKLYN QNLFSGSSSR SHGAEGKQFN FLHGTTLALS  240
NQMVPEASTC QPFHKSVGGH NSREMFCNGL STQVLNSNCA LSLLSSSPLQ TSEIGLSHMV  300
PPSSIPLAHP LGPSLHNSAL ESMDSLLVPN ASDTNVHCQG MFHMGRDSSS ENEASQTLPF  360
CWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-19901561184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139156KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125244.11e-165squamosa promoter-binding-like protein 13A
SwissprotB9DI203e-58SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI113e-58SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A2R6PDL30.0A0A2R6PDL3_ACTCH; Squamosa promoter-binding-like protein
STRINGEOY225191e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-56SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]