PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn296391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 1835aa    MW: 201625 Da    PI: 4.8604
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn296391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.11.4e-54129513981101
       NF-YC    1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94  
                  ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvd
  Achn296391 1295 QLQVFWANQmqdIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVD 1391
                  89******988889*********************************************************************************** PP

       NF-YC   95 ivprdel 101 
                  i+prdel
  Achn296391 1392 IIPRDEL 1398
                  *****87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd064101.00E-42180276No hitNo description
SMARTSM006665.7E-26191278IPR000270PB1 domain
SuperFamilySSF542772.22E-21192280No hitNo description
PfamPF005646.1E-19193277IPR000270PB1 domain
Gene3DG3DSA:3.30.200.201.2E-269341032No hitNo description
SuperFamilySSF561121.52E-789371210IPR011009Protein kinase-like domain
SMARTSM002201.5E-619481214IPR000719Protein kinase domain
PROSITE profilePS5001141.9559481213IPR000719Protein kinase domain
PfamPF077146.5E-639501211IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CDDcd139991.86E-1119541211No hitNo description
PROSITE patternPS001070954979IPR017441Protein kinase, ATP binding site
PRINTSPR001092.0E-1210301043IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.105.2E-4910331229No hitNo description
PRINTSPR001092.0E-1210671085IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS00108010731085IPR008271Serine/threonine-protein kinase, active site
PRINTSPR001092.0E-1211381160IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001092.0E-1211821204IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
SuperFamilySSF471135.03E-3212871389IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-3613091381IPR009072Histone-fold
PfamPF008083.2E-2013171380IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
TIGRFAMsTIGR008201.4E-11415551834IPR004698Zinc/iron permease, fungal/plant
PfamPF025352.5E-6115591831IPR003689Zinc/iron permease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0071577Biological Processzinc II ion transmembrane transport
GO:0005829Cellular Componentcytosol
GO:0016021Cellular Componentintegral component of membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005385Molecular Functionzinc ion transmembrane transporter activity
GO:0005524Molecular FunctionATP binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1835 aa     Download sequence    Send to blast
MEQPKNHDGH QYNRMQPGNE ELESTSQGFM LDPSSCINSN TRPPELRFSE VKPVLNFSIQ  60
TGEEFALEFM RDRVNPKKPF IPNTAGDLNY TPGYLELKGI LGISHTGSES GSDISMLTAV  120
GKGQNEFEQK NSSLYDDKSN YGSVQSVPLT SWDYNSYRGT IQEYSSSGAS ERSSTKIKIL  180
CSFGGRILPR PSDGELRYVG GETRIIRIST DITWQELWQK TGTVYNQTQA IKYQLPGEDL  240
DALVSVSCDE DLQNMMEECN VLQGGEGSRR LRMFLFSLND LEDAHFGLGS CDGDSEIQYV  300
FAVNGMDVGA RNNSNLHGIV SSSGNDLDEL DRQNVERDTG GAATDHVVVS NSQLTSYLVS  360
ATQSSQPILP SFSNTYETPS QLYNGQMMHH GEAKQYPLPC GYDSHLPNHT PFGESSGLLP  420
LHGNTTQKRG LTEGQQSSVL FIQDPQMQVE ELKLKNDASI QQEVGDEIIL PSSKDNHVHA  480
QPLDGDVRDY FLDEEASAVI STLDEELKPL KTEGRHQEPV QVSSPLSAIS HVQVPKADEN  540
VGHSSSGAVT PGYGNSESDP IDLSYLEPPV PSHRVFYSER IPREQAELLN RFSKSDDSLG  600
SQFLINHTHS DLVQQGFITE SVCLETEQPI STEKPLYGDL HTIADGAGKL QNVKQTVSNS  660
IVNEDRILKD ENGTQDKNLP VDETSEAGSE FPAAIQVASV MHGENSARGL PEPEWSDKAD  720
SNFSVNNTQG HDQHSAWMEN FREPSVGVSR CGDILIDIND RFPRDFLSDI FSKAILSEGS  780
SGISPLQQDG AGLSLNIENQ DPKHWSFFQK LAGDEFSRKD VSLIDQDHFG FSSGLPKVEE  840
EEAPISYTFT PLTTGDISLS HLDSQNYSGD RRELPGTIGS DTAVLHSDYS PSQVKFSDGM  900
QFDNFTENSG APDSEYEDGS RNIGLPPLDP SLADIDISSL QIIKNEDLEE LRELGSGTFG  960
TVYHGKWRGT DVAIKRIKKS CFTGRSSEQE RLTIEFWREA EILSKLHHPN VVAFYGVVQD  1020
GPGGTLATVT EYMVDGSLRH VLLRKDRHLD RRKRLIIAMD AAFGMEYLHA KNIVHFDLKC  1080
DNLLVNLKDP SRPICKVGDF GLSKIKRNTL VSGGVRGTLP WMAPELLNGS SNKVSEKVDV  1140
FSFGIVLWEI LTGEEPYANM HYGAIIGGIV NNTLRPSIPS YCDPEWRSLM EQCWAPNPAA  1200
RPSFTEIASR LRVMSATKPN QRTQQQQQQP VVGIVAGAGS LAYASPPYYS APMGTSGAPA  1260
VAVPSPTQPP TSFPTSQHQL AYQHLHHQQQ QQQQQLQVFW ANQMQDIEQT TDFKNHSLPL  1320
ARIKKIMKAD EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI  1380
SRTDVFDFLV DIIPRDELKE EGLGITKATI PLVGSPADSV PCYYVPTRHP AGPTGMIMGQ  1440
PVDQAAMYTG QQPQPPVALM PWPQPQLQQA QQHQNTSRSL RYELTSGRDH QGKHPERVLN  1500
EAVEYGQGKR GRLAAAGLSQ AQDVLTGEDS GNAVVLDCGG FLHPELFASL GCPFGRPRPE  1560
SDIFFMVKAF AAGVILATGF VHILPDAFDN LTSPCLNQDL WGIFPFTGFV AMMSSIGTFM  1620
VDSFATGYYQ RLHLNHNKPQ PQPLQVRING DEERVVPQRA DQAHASAIPA EETDLVRNRI  1680
ISQVLELGVF IHSIIIGISL GASQNPETIK PLLAALSFHQ FFEGMGLGGC ISQAKFKSLS  1740
TTIMVLFFSL TTPVGIATGI AISSVYKEDS PTALTVGGVF NSAAAGILIY MALVDILAAD  1800
FMNPRMQGNG RLQLGANTSL LLGAACMSVL AKWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ppz_A2e-53947122338307Serine/threonine-protein kinase CTR1
3ppz_B2e-53947122338307Serine/threonine-protein kinase CTR1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113671373RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263264.10.0PREDICTED: uncharacterized protein LOC100257013
TrEMBLA5B0050.0A5B005_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g00550.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-72nuclear factor Y, subunit C2