PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn293631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 320aa    MW: 36354.5 Da    PI: 7.7527
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn293631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.2e-3052161289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 
                  g kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i++l+ +                   s++  +c         
  Achn293631  52 FGSKDRHSKVYTVKGLRDRRVRLSVPTAIQLYDLQDQLGLSQPSKVVDWLLNAAKDEIDKLPPLqmpnfgpshqalvasdlgVSDP--NC--------- 139
                 578*************************************************************7774433332222222211111..11......... PP

         TCP  83 snsssg..................k 89 
                 ++   +                  +
  Achn293631 140 QT---NkkgfninnsvnwedqlglA 161
                 11...11122232333333333220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-2954195IPR005333Transcription factor, TCP
PROSITE profilePS5136929.78954112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MITTSREEDL TIKQEGHTVD KFSKASSRTT TSTSTPWSRF KDPRIVRVSR AFGSKDRHSK  60
VYTVKGLRDR RVRLSVPTAI QLYDLQDQLG LSQPSKVVDW LLNAAKDEID KLPPLQMPNF  120
GPSHQALVAS DLGVSDPNCQ TNKKGFNINN SVNWEDQLGL ARSNFWDSDA NLRDKLKEVA  180
TDERENWNRR NEEEKQESVG ISPNNFIPRS NHLAIPGLLN NVMTYNTNLY RLEHSSFSYI  240
PPQTDDNQNF INIVSQPYFP SNSVEFDLKQ INHFQMLSSS TSRNTLSNSL TPTLYSTNQS  300
MKPLQLMSVT ENNDEFPPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1959113155Putative transcription factor PCF6
5zkt_B5e-1959113155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108887.11e-114transcription factor TCP13-like
RefseqXP_028108888.11e-114transcription factor TCP13-like
RefseqXP_028108889.11e-114transcription factor TCP13-like
SwissprotQ9FME36e-43TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A2R6RYJ80.0A0A2R6RYJ8_ACTCH; Transcription factor like
STRINGEOY036993e-94(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]