PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 209aa    MW: 24226.1 Da    PI: 6.0384
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer58.12e-181671458
  ZF-HD_dimer  4 vrYkeClkNhAaslGg.havDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 v Y+eC++Nh ++      +DGC +f++ +++ +   al Ca CgCHR +HRre++
   Achn288711 16 VIYRECQRNHSIQPHRlLLLDGCPDFVNLDHNATPELALYCATCGCHRQYHRREEV 71
                 79*********997651578********977778899****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-161670IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-61669IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152316.0491869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.58E-14142203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-20143202IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-21145200IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MANNNNANAR RWATIVIYRE CQRNHSIQPH RLLLLDGCPD FVNLDHNATP ELALYCATCG  60
CHRQYHRREE VMVQVEPATV EVIHQLAVGV AAPPPHHHHG GAPLPAPQEE DGHHPVPEEN  120
LGDGEVEEEK EGEEEWRPEW VVRRRERRTR FTPEQRQAMR AYADGLEWRL QGHCEESLCR  180
FCEEIGVSPQ VFKVWMKNNK RKYYDVED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RGK11e-152A0A2R6RGK1_ACTCH; Zinc-finger homeodomain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.16e-10homeobox protein 33