PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn287951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 522aa    MW: 59140.3 Da    PI: 4.7562
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn287951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.25.2e-371505202374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 v+l+ +  eav++++ ela+ + +r++e++sp g  m+Rl  y+ + L ++              +++s    ++  aa+k+f+e++P+ kf+h++aN 
  Achn287951 150 VHLVKAYGEAVDTEQRELAKVIAERIRERVSPVGGVMERLLCYLFQPLDKQACY----------LKQES---GKNFHAAFKAFYEIFPYGKFAHFAANL 235
                 677888889***************************************999887..........34444...7888999******************** PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..el 191
                  Il+a+ ++ e +HiiDfd++ G+QW ++++a+     ++ ++++T ++ +e +      + + eet++ L + A+++g+++  + +   +l+dl  ++
  Achn287951 236 EILKALPHDvEVIHIIDFDMGAGIQWSSMIEAIRG---QQREIKLTSIKWSEGDyncdpTRWRFEETKRWLCDHARTFGLKLTVDSM---KLHDLvsKI 328
                 ******9998899******************9965...5678*******97777999988999**********************97...677772244 PP

        GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adhnse.sFlerflealeyysalfdslea 273
                 ++++  +    +  la n+++ l ++    v +++  +e+L + k+l          +  ++++   +  a+ ns  sF   +   l ++ al++s+e 
  Achn287951 329 KKMK--KnggrRKWLAFNCMVGLPHMG--MVRSRKDVSEFLGAAKELlaytaifgcnNTGIITLGYGDtwAESNSYsSFGSFLDGHLVHCQALLESMEW 423
                 4444..24477999************8..6666666899******99333333333344555555544445554443666666678************* PP

        GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLv 368
                 ++p    e+r+ +E  l+   +v+ +a  +++  e+     k  +  + +G++  ++ ++   +ak ++r  + + y+++   e+++++vl W + pLv
  Achn287951 424 TFPIRLgEARTALEC-LFVAPLVSSIARIHKQ--EE----TKCFDVQSGFGLEGWQVCKESLVEAKEMVRAGE-NLYELKiegENNNCMVLKWGEIPLV 514
                 ***999455555555.5666666677766665..22....233455678999999999999*******99988.55777666899************** PP

        GRAS 369 svSaWr 374
                  vS+Wr
  Achn287951 515 RVSCWR 520
                 *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.23123521IPR005202Transcription factor GRAS
PfamPF035141.8E-34150520IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MQPDFLQYSS WSSFSNRNSS LDEFDDGLFM DSTVDHYEFS PSFTISDDSD NSIISIFPST  60
SPDQLMKLPV LAETDFSIAL DDFVIEDMPE PLEESEKSCP SQWFSMDGED GWSLSSPVNS  120
SDKSMDMSLI HASLTLPTED MELGNELRLV HLVKAYGEAV DTEQRELAKV IAERIRERVS  180
PVGGVMERLL CYLFQPLDKQ ACYLKQESGK NFHAAFKAFY EIFPYGKFAH FAANLEILKA  240
LPHDVEVIHI IDFDMGAGIQ WSSMIEAIRG QQREIKLTSI KWSEGDYNCD PTRWRFEETK  300
RWLCDHARTF GLKLTVDSMK LHDLVSKIKK MKKNGGRRKW LAFNCMVGLP HMGMVRSRKD  360
VSEFLGAAKE LLAYTAIFGC NNTGIITLGY GDTWAESNSY SSFGSFLDGH LVHCQALLES  420
MEWTFPIRLG EARTALECLF VAPLVSSIAR IHKQEETKCF DVQSGFGLEG WQVCKESLVE  480
AKEMVRAGEN LYELKIEGEN NNCMVLKWGE IPLVRVSCWR S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057264.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6RRQ40.0A0A2R6RRQ4_ACTCH; Nodulation-signaling pathway 2 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-19GRAS family protein