PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 513aa    MW: 57904.8 Da    PI: 4.4961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.16.7e-451475122374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL +  ea++ ++ ela+ +++ + e +sp g++++Rl+  + +   +             +    ++++ ++  aa+++f++++P+ +f+h+taN+
  Achn286961 147 QHLLKAYGEAMEMEQRELAEVIVKCIVEKVSPVGETLERLTLNLFQSEGK-------------QGDYLKQESIKNFEAAFNAFYQIFPYGRFAHFTANS 232
                 6788888999999**************************87544332111.............222222334778889999****************** PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 a+lea+ ++ e+vHiiDfd+++G+QWp++++a a+R++    lR+T ++ ++ g      + eet++rL + A+++g++++ + +    +edl + + +
  Achn286961 233 AVLEAMPENvETVHIIDFDMMEGVQWPPMIEAVAQRQNA---LRLTSIKVEDCGdapLYWRFEETKRRLCNHARSFGLNLKVDEV---GIEDLVTAMGK 325
                 ******9999**************************876...********888866666789*********************98...77777777777 PP

        GRAS 196 vkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.e 280
                 +k+    +E l+ n+++ l ++  ++ sl++  +e+L + k l      +  ++++ + +a     + +++   f + l+++ al +s+e ++p    e
  Achn286961 326 IKKrggrREWLVFNCMVGLPHMG-RERSLSH-VKEFLGVAKALlddsatNKGIITIGDGDAAErlkSCTTYGSFFDKNLYHFQALCESMEWNFPVCLaE 422
                 77777889**************8.4444444.79******987555444677******99655353445788888899****************8766* PP

        GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                 +r  +E+ +++++i+++   ++ e      ++++ ++   e G++ ++l+e++ ++ak ++++ k   ++v    ++++++vl W++ +Lv vS Wr
  Achn286961 423 ARLAMENLFVAPSISSLSWRRKWE------EMREGSDLHAEIGLEGLRLTEENLTEAKEMMAEGK-SLFTVRieaQKQNEMVLEWRGTSLVRVSTWR 512
                 **************9987776666......5667789999*********************9999.34666655778*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.538120490IPR005202Transcription factor GRAS
PfamPF035142.3E-42147512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MMQPQLFQQS SWPFYNIMHS PRDHVGAYGG LQMNGQFLST IFSNEFLEDP MSGDELQSPI  60
PVETIADDME GIDIISCGEF EDVCRWLGED ACEGSLSSEQ LSIEGEDVWS PCPSTKSSEA  120
SMVFPSAQVS PSLPRDGNEI ETQLTIQHLL KAYGEAMEME QRELAEVIVK CIVEKVSPVG  180
ETLERLTLNL FQSEGKQGDY LKQESIKNFE AAFNAFYQIF PYGRFAHFTA NSAVLEAMPE  240
NVETVHIIDF DMMEGVQWPP MIEAVAQRQN ALRLTSIKVE DCGDAPLYWR FEETKRRLCN  300
HARSFGLNLK VDEVGIEDLV TAMGKIKKRG GRREWLVFNC MVGLPHMGRE RSLSHVKEFL  360
GVAKALLDDS ATNKGIITIG DGDAAERLKS CTTYGSFFDK NLYHFQALCE SMEWNFPVCL  420
AEARLAMENL FVAPSISSLS WRRKWEEMRE GSDLHAEIGL EGLRLTEENL TEAKEMMAEG  480
KSLFTVRIEA QKQNEMVLEW RGTSLVRVST WR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077641.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2R6RRR10.0A0A2R6RRR1_ACTCH; Nodulation-signaling pathway 2 protein
STRINGEOY071071e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-24GRAS family protein