PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286491
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 271aa    MW: 29568.6 Da    PI: 8.4274
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.8e-3355109558
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  +Y+eCl+NhAaslGghavDGCgEfmps+ ++ +++++l CaACgCHRnFHRr+ +
   Achn286491  55 VYRECLRNHAASLGGHAVDGCGEFMPSPAAThSDPTSLICAACGCHRNFHRRDDD 109
                  7**************************99999********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2155114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2755107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.97956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-2956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.609.1E-29158228IPR009057Homeodomain-like
SuperFamilySSF466891.13E-17160228IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-25167223IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDTNTTTTTD NNATPTHSLD TQNKTPPANK SLSFTNSTLK KHSPYDPQPL AVVGVYRECL  60
RNHAASLGGH AVDGCGEFMP SPAATHSDPT SLICAACGCH RNFHRRDDDP SPAALFLDFR  120
RPPPRRGSSP LSSPSPPPPP QPSHHHQNAV ATPATPTEAK AENPSGRKRF RTKFSQDQKE  180
KMHSFSEKLG WKMQRSEEGL IEEFCSEIGV GKGVLKVWMH NNKHTFGKRD THSTTTTNNN  240
NNSHHLHVHH HEDSNGVHLH VSADGSPSSA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-191682251875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116046.15e-85zinc-finger homeodomain protein 11-like
TrEMBLA0A1U7X8A55e-80A0A1U7X8A5_NICSY; zinc-finger homeodomain protein 9-like
STRINGXP_009788342.18e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-45zinc finger homeodomain 1