PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn277561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 450aa    MW: 49108.2 Da    PI: 7.0871
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn277561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.7e-351142272100
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasnsssg.. 88 
                 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++         +    ++  e+++ + s +  ss+  
  Achn277561 114 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELDELppwkptsgdQ----NNPhEPQQIRDSFGGTSSNil 208
                 79**************************************************************7766543321....111233333333333333355 PP

         TCP  89 ......kaaksaa.kskks 100
                       +++++ +  ++ +
  Achn277561 209 laggdvQHQEQLMeMTNAR 227
                 5555552222222233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-31114213IPR005333Transcription factor, TCP
PROSITE profilePS5136933.064116174IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MPSLSSTTTN RIVRTFYTRT PLLLLRPIVK TDLCAKLRKT GHRHVEEEEN QNQHQSPKKR  60
SYLSSSSSLG QNVEYVQGKM EETQHHRQTP SRLGLRHAGG EIVEVEGGHI VRSTGRKDRH  120
SKVCTAKGPR DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKAA IDELDELPPW  180
KPTSGDQNNP HEPQQIRDSF GGTSSNILLA GGDVQHQEQL MEMTNAREND SGGFLPASLD  240
SDAIADTIKS FFPMGGASAE TNNSSSMQFQ NFPPPDLLSR TGGQRQQDLR LSLQSMDDQI  300
LLHHQHQPPP QSQPLFSGLG FDAATSGGWW NAGGGDAASS GGGGGGFIFN SPPPPTPFFG  360
QNNQFVSQRG PLQSSNTPYV RTWIDPCSIS AAADHHHQSV PLHPSFSGIS FASVGGFSGF  420
RIPTRLQGEE EEHDGISDKP SSASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19121174154Putative transcription factor PCF6
5zkt_B1e-19121174154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688631e-67AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818311e-67FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068857.11e-150transcription factor TCP4-like
SwissprotQ9MAH89e-93TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2R6PTG50.0A0A2R6PTG5_ACTCH; Transcription factor like
STRINGXP_009785152.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-50TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]