PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn272241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 786aa    MW: 89580.2 Da    PI: 6.7363
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn272241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.19.8e-3177169291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk ++ +gkw+v+ +++eHnHel+p
  Achn272241  77 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDsSGKWVVSGFVKEHNHELVP 169
                 9***************************************998888545677889*****************99*****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-2977169IPR004330FAR1 DNA binding domain
PfamPF105511.4E-32290382IPR018289MULE transposase domain
PfamPF044348.4E-12558604IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.251570606IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MESEVIEFDI GLGGGGGGGS SGDEDGMDGQ HPVMDEDMAD SSPTGGAVGA IYIPEGDPDL  60
EPYENMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE  120
KRTKDREIKR PRTITRVGCK ASLSVKIQDS SGKWVVSGFV KEHNHELVPP DQVHCLRSHR  180
QISGPAKTLI DTLQAAGMGP RKIMSALIKE YGGISKVGFT EVDCRNYMRN NRQRSFEGEI  240
QLLLDYLRQM HSENPSFFYA VQGDEDQYTG NVLWADPKAR MNYTYFGDTV TFDTTYRSNR  300
YRLPFAPFTG VNHHGQPVLF GCAFLINESE ASFVWLFKTW LMAMSGRPPV SITTDHDMVI  360
RSAFKQVFPE TRHRFCKWHI FKKCQEKLSH VFLPHPNFEA DFHKCVNLTD SIEEFESCWL  420
SLVDKYDLRD HEWLQTIYSA RKQWVPVYLR DTFFAEMSIT QRSDSMNSYF DGYVNASTNL  480
NQFFKLYEKA LESRNEKEVK ADYDTMNTSP VLKTPSPMEK QASELYTRKL FVRFQEELVG  540
TLTFMASKVD DDGDVTTYQV AKFGEDHKAY YVKFNVLEMR ATCSCQMFEF SGLLCRHVLA  600
VFRVTNVLTL PSHYILKRWT RNAKSTIILE ERATGVFNSY LESHTVRFNT LRHEAFKFVD  660
EGAESIDSYN MAMVALQEAS KRVAIATKNE GKTPMINGRI TEDSTNGGSQ ANICSGDRPK  720
SISQQFSEDD MDKKIRDLSH ELDCANRKCE VYGANLLSVL RDIEDHKQQL SVKVQNVKLS  780
MKDVL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064185.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2R6R7500.0A0A2R6R750_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEOX989490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]