PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn269421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 211aa    MW: 24090.7 Da    PI: 9.8307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn269421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1777127255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y GVr ++ +g+++AeIrd +    + +r++lg+f taeeAa a+++a+  ++g
  Achn269421  77 RYIGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFTTAEEAALAYDQAAFVMRG 127
                 799******.**********422...25***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-2876134No hitNo description
SuperFamilySSF541711.05E-2177136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-2877135IPR001471AP2/ERF domain
SMARTSM003801.3E-3277141IPR001471AP2/ERF domain
PROSITE profilePS5103221.44377135IPR001471AP2/ERF domain
PfamPF008471.5E-1277127IPR001471AP2/ERF domain
PRINTSPR003671.3E-97889IPR001471AP2/ERF domain
PRINTSPR003671.3E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MESQCVLEHS VRLRRRLWPV TKRLSWFNFL PKSSLSLEEN NSSDDTCLPH FQSEKVKEKC  60
LETDSSSGTK DLKKEKRYIG VRKRPWGKYA AEIRDSTRHG ARVWLGTFTT AEEAALAYDQ  120
AAFVMRGRLA RLNFSTDKVC ESLREMKCKV CESLRKMKCR CENGSSSSKA LKEINKKGLK  180
ILRGKKKEEN NMLVFEDLGA DLLDELLSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-25771341471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838903.13e-53PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_028056765.11e-52ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-43ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6RJ731e-130A0A2R6RJ73_ACTCH; Ethylene-responsive transcription factor
STRINGMigut.K00942.1.p8e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-24ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]