PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn261561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family RAV
Protein Properties Length: 303aa    MW: 34460.2 Da    PI: 8.4478
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn261561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.76.6e-093077255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ++kGV   + +g W A+I+       + +r++lg+f ++ eAa  ++ a +kl+ 
  Achn261561 30 KFKGVVPQP-NGHWGAQIYA------NhRRIWLGTFKSEIEAAMVYDSASLKLRT 77
                799998777.8******999......44**********99**********99985 PP

2B383.12.7e-26150247186
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+k+ltpsdv+k++rlv+pkk+a ++            +  k  ++ l ++d+  r W+++++y+k+s+++v+t+GW++Fvk++gLke+D++ F++ +
  Achn261561 150 FQKELTPSDVGKLNRLVVPKKYAVKYfpvvpestegntDDGKVDEVHLFFYDRMMRLWKFRYCYWKSSQSFVFTRGWNRFVKEKGLKENDIIAFYVCE 247
                 99****************************99999888444458899************************************************653 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-202987No hitNo description
PROSITE profilePS5103216.3713085IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-143085IPR001471AP2/ERF domain
SMARTSM003801.1E-153091IPR001471AP2/ERF domain
PfamPF008472.5E-43077IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-133086IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.7E-30147250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-27148247IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-23149244No hitNo description
PfamPF023629.4E-24150250IPR003340B3 DNA binding domain
SMARTSM010192.4E-19150254IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956150267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MIEDVKTHVI AEGSVSSSPC QPSNAAMPAK FKGVVPQPNG HWGAQIYANH RRIWLGTFKS  60
EIEAAMVYDS ASLKLRTGDN YRNFPWTNVT VHEPKFQSLH STEAILNMIR DGSYSSKFAD  120
FLGSQKGEQE LSVNLITVHG HGGFSFKLLF QKELTPSDVG KLNRLVVPKK YAVKYFPVVP  180
ESTEGNTDDG KVDEVHLFFY DRMMRLWKFR YCYWKSSQSF VFTRGWNRFV KEKGLKENDI  240
IAFYVCEGRE RAKEGHSFCL IDVVYPEGST NSRVDEGTSQ NVDMQVDLRL MLGQNLNCWL  300
VK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2714925113108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093432.11e-163AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-98RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2R6REH60.0A0A2R6REH6_ACTCH; AP2/ERF and B3 domain-containing transcription factor
STRINGVIT_11s0037g00010.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-101RAV family protein