PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn258161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 264aa    MW: 27941.6 Da    PI: 10.21
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn258161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.4e-3841127387
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 
                 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  + + +++s+s+ss+
  Achn258161  41 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSVSLRNNSSSHSSI 127
                 79******************************************************************8884322222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.89246100IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-3446132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSRDVYCTRE IKEHGATNGV TNGAIIEHQQ RQQPPNGALV VKKPPAKDRH SKVDGRGRRI  60
RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSVSLRNN  120
SSSHSSISAA LDPKPMITPT PFILGKRLLP IDDTVDGAAK DDVSPSLGGP AAASGGFWAL  180
PARPDFGQVW SFAAAPPEMV VSSPAMASQP SFTGRFMQQQ PMGEASAARV GNYLPIAQGH  240
LNLLASLSSA PTTSSGRRED DPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-63AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-63AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051557.11e-127transcription factor TCP7
SwissprotQ9FMX26e-88TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2R6PBC01e-180A0A2R6PBC0_ACTCH; Transcription factor like
STRINGVIT_10s0042g00170.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-62TCP family protein