PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn247961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 358aa    MW: 39112.4 Da    PI: 8.2141
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn247961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.3e-24118219299
                 EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  kvlt sd+++ g +++p+++a+ +         ++ +  tl+++d +g  We+++iyr++++r++lt+GW++Fv+ ++L +gD vvF+ ++r+++el+
  Achn247961 118 AKVLTASDANNGGGFSVPRTCADLIfpslnfaADPPVQ--TLSIRDVRGVAWEFRHIYRGTPRRHLLTTGWSRFVNHKKLVAGDYVVFM-KNRRSGELF 213
                 699*******************888*****96555555..8************************************************.4449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+++r+
  Achn247961 214 VGLRRA 219
                 ***996 PP

2Auxin_resp82.21.2e-27266347383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 + a+ + +FevvY+P+ ++ +Fvvk+e ve++l+v +++GmR+kma+e+ed+s  ++ +Gtv++    d+  W +S+Wr+L+
  Achn247961 266 ELAARGLAFEVVYYPKRGSVDFVVKAETVEESLNVFWTAGMRVKMAVESEDASGVKWfQGTVSSAMVPDNGPWLGSPWRMLQ 347
                 5688899*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-32115224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-28116223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-19116218No hitNo description
SMARTSM010193.0E-15117220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858117220IPR003340B3 DNA binding domain
PfamPF023621.3E-21118219IPR003340B3 DNA binding domain
PfamPF065075.4E-25265347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAADTGVDPT VWKACAGTSV RIPTVDSRVY YFPQGHAEHF SSPPFLSPIV SSQPLILCRV  60
AAVRLLANPE TDEVFAKIRL VPIDPARDIH ALERKLGFSG GSNAEEENGE EAVVSSYAKV  120
LTASDANNGG GFSVPRTCAD LIFPSLNFAA DPPVQTLSIR DVRGVAWEFR HIYRGTPRRH  180
LLTTGWSRFV NHKKLVAGDY VVFMKNRRSG ELFVGLRRAV RTDAKCGGRW NFPVTEDDGF  240
SGGGKEGFSR SGRGMVSSES VVLEAELAAR GLAFEVVYYP KRGSVDFVVK AETVEESLNV  300
FWTAGMRVKM AVESEDASGV KWFQGTVSSA MVPDNGPWLG SPWRMLQVCL SHYLGRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-571134823333Auxin response factor 1
4ldw_A7e-571134823333Auxin response factor 1
4ldw_B7e-571134823333Auxin response factor 1
4ldx_A7e-571134823333Auxin response factor 1
4ldx_B7e-571134823333Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091086.11e-172auxin response factor 17 isoform X1
RefseqXP_028091087.11e-173auxin response factor 17 isoform X2
SwissprotQ84WU61e-112ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2R6Q1690.0A0A2R6Q169_ACTCH; Auxin response factor
STRINGXP_010277676.11e-141(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-111auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]