PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn247721
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 755aa    MW: 87722.7 Da    PI: 7.3193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn247721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.11e-11721263689
        FAR1  36 skegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 +++g+++++++k + +++r+r etr+gC a++ v+k+++g w v+ +e++HnH++
  Achn247721  72 NRKGFEKKDTRKmQLQKKRRRGETRVGCGARIYVNKTDEGMWAVSLFEEDHNHKC 126
                 789999988888677899999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-1072126IPR004330FAR1 DNA binding domain
PfamPF105511.4E-29249343IPR018289MULE transposase domain
PROSITE profilePS509669.681528566IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-4541568IPR006564Zinc finger, PMZ-type
PfamPF044344.2E-6542563IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MVYNLEDFDA EIYDEKEYID ELYGHEEHDG DDTEDRLEDL NMENEEIDVN NVEKPYVGMK  60
FESDDDAYVF YNRKGFEKKD TRKMQLQKKR RRGETRVGCG ARIYVNKTDE GMWAVSLFEE  120
DHNHKCETPK KCHLFTSHRR VDGNQGAMIE KMNEAGIRKN LMMHYLSEEA QGRRNVGFTE  180
RDMRNYLHSK RAKTFEKGDA QCLLDYLNEK QLENPHFFYA IQLDAEAQMT NFFWVDAKAR  240
MDYSYFGDVV CFDTTYGTNA YAKPFIPIVG VNNHLQTTLF GCALMLDETV TSFQWVLQTW  300
MKVMKGFHPK LIFTDQDAAM AAAIANILPN TCHRFCLWHI FQNVKKHLSH LFRRGSLFGK  360
DFSHCIRSFE TVEDFEMGWD ALLTKYNLHD NEWVAKLYSK RQKWVPVYSH DFFCADMSTT  420
QRSESINNFF KGFLQRNMLL LDFVRGVDKA LVSRREAEID ADFYMNNVIP PLVLHMPIEE  480
VASKLYTPCL FRKFQEELIG SLRYTCEKIK EEGPNSTYKC KIVNKEIKER IVSFNSLDHS  540
VKCSCCKFTF MGILCKHILR VFIVENVHQI PEQYILKRWS ADAKDGVVTD DNGAQLRENC  600
HAPLTLRYSI LCHEAINIAT SGASSIEVFE VARQGLRRTK CEVETVKKKQ STNNINDCPM  660
NEKNVNNQAE NIVIREPDIV KTKGRPGRYK AFWEKKNSKK QKAKGSTMRE SPTGTGHRQN  720
TRDKGSYQCP NINDTNVLNN IINQSGHLAT FDKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-157FAR1-related sequence 5